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Yeast Genome Editing

CD Biosynsis provides expert Yeast Genome Editing Services tailored for metabolic engineering, protein expression, and basic research in yeast host strains, primarily focusing on Saccharomyces cerevisiae and Pichia pastoris. Utilizing cutting-edge technologies, including highly efficient CRISPR/Cas9 Genome Editing , we enable precise and multiplex genetic modifications. Our services cover everything from single Gene Knockout to complex Gene Knock-in for pathway construction, ensuring rapid and accurate modification of the yeast genome. We are committed to accelerating your research and bioproduction goals with validated, high-quality engineered yeast strains.

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Precision Genome Engineering in Yeast

Yeast, particularly Saccharomyces cerevisiae, is a premier cell factory in industrial biotechnology due to its robust growth, capacity for complex protein modification, and well-characterized genetics. Precise genome editing is fundamental to enhancing its capabilities for producing biofuels, biochemicals, and pharmaceuticals. Our platform is designed to overcome common challenges in yeast transformation and editing, offering superior efficiency and targeting accuracy. We handle projects of all scales, from modifying a single gene to engineering entire metabolic pathways.

Customized Yeast Genome Modification

CRISPR/Cas9 and Base Editing Functional Modification Services Advanced Engineering

High-Fidelity Targeting Systems

Modern Gene Editing Tools

Fast, efficient, and multiplexed editing using the CRISPR/Cas9 system for high-volume projects requiring multiple simultaneous modifications.

Precise single-base pair changes (e.g., C>T, A>G) without inducing double-strand breaks, ideal for introducing point mutations or single amino acid substitutions.

CRISPR Multiplexing

Simultaneous targeting of up to five different genomic loci in a single transformation step, significantly accelerating pathway construction.

Modifying Gene Function and Expression

Targeted Genomic Changes

Stable and complete deletion of target genes, essential for eliminating competing metabolic pathways or assessing gene function.

Precise integration of large DNA fragments, including entire synthetic pathways or heterologous genes, at specific genomic locations.

Tunable and reversible gene knockdown using CRISPR interference (CRISPRi) for fine-tuning metabolic flux or studying essential genes.

Pathway and Chromosome Engineering

Complex Genomic Rearrangements

Promoter Engineering

Modification of native and synthetic promoter sequences to optimize gene expression levels and regulatory responses to environmental signals.

Chromosomal Integration

Ensuring stable, marker-free integration of transgenes into the yeast chromosome for long-term genetic stability and industrial readiness.

Strain Background Cleanup

Removal of antibiotic resistance markers and unwanted genetic elements to create clean, regulatory-compliant host strains.

Key Methodologies for High Success Rate

Optimized CRISPR/Cas9 Tools

Utilization of yeast-codon-optimized Cas9 variants and efficient guide RNA scaffolds to maximize cleavage efficiency.

Homology-Directed Repair (HDR)

Maximizing the efficiency of the yeast's native HDR pathway for scarless gene insertion and precise point mutation placement.

High-Throughput Verification

Integration of PCR, DNA sequencing, and digital droplet PCR (ddPCR) for rapid and accurate verification of all edits.

Yeast Editing for Industrial and Research Use

Metabolic Pathway Engineering

Creating novel yeast strains capable of producing fuels, chemicals, or natural products by assembling entire heterologous pathways.

Recombinant Protein Production

Optimizing yeast for high yield and correct post-translational modification of therapeutic proteins (e.g., antibodies, growth factors).

Gene Function Studies

Systematic knockout or knockdown libraries for functional genomics screening and identifying novel drug targets.

Yeast Genome Editing Workflow

A structured approach ensuring high success rates and quality.

Design & Synthesis

Transformation & Screening

Verification & Isolation

Final Quality Control

Target Selection: Consultation to finalize target genes and desired modifications (KO, KI, point mutation).

Reagent Synthesis: Design and synthesize guide RNAs (sgRNA) and donor DNA templates.

Cell Preparation: Prepare highly competent yeast cells.

Co-Transformation: Introduce Cas9, sgRNA, and donor DNA (if needed) into the host strain.

Primary Screening: Select for transformants using appropriate markers and plate screening methods.

Edit Verification: Isolate colonies and verify edits using locus-specific PCR and Sanger sequencing.

Marker Removal: If applicable, remove selection markers (scarless editing).

Final QC: Deliver the confirmed, pure engineered yeast strain along with a detailed report.

Why Choose Our Yeast Genome Editing Platform?

Guaranteed Knockouts

           

We offer a guarantee for successful gene knockout for non-essential genes in standard lab yeast strains.

Complex Multiplexing

           

Expertise in simultaneously editing up to five sites, drastically reducing the time needed for pathway engineering projects.

Scarless Integration

           

Focus on marker-free and scarless editing techniques that are essential for industrial and regulatory compliance.

Broad Host Strain Compatibility

           

Services extend beyond S. cerevisiae to include other industrial yeasts like Pichia pastoris and Yarrowia lipolytica.

Client Testimonials on Yeast Genome Editing

   
   

"The multiplex CRISPR service was highly successful, allowing us to simultaneously knock out three competing pathways and knock in a new synthesis cassette, all in one project timeline."

Dr. Emma Velez, Lead Bioprocess Engineer, Biochemical Production

"We relied on their Base Editing service for targeted point mutations in our enzyme library, resulting in a significantly improved and stabilized protein variant for our manufacturing line."

Mr. Julian Hao, R&D Director, Pharmaceutical Intermediates

"The quality control and sequencing data provided were impeccable, giving us total confidence in the edited strain before proceeding to large-scale fermentation trials."

Ms. Lena Koster, CTO, Nutritional Yeast Products

"We commissioned CD Biosynsis to support an intricate gene editing project with multiple targets. Their talent in producing high-quality work in a short period of time was impressive. Their solutions were custom made to suit our needs, and they went above and beyond to ensure our experiments worked. Their support has been a great asset to our research department and we look forward to further working with them."

Dr. Raj Patel, Principal Investigator, Department of Molecular Biology

"As a pharmaceutical company working to discover new cancer therapies, we require accurate, trustworthy gene editing solutions. CD Biosynsis did more than what we expected when it came to providing strong, accurate CRISPR/Cas9 solutions for our preclinical research. Their technical support team was excellent and responsive, and they quickly replied to our questions. This alliance has been pivotal in helping us move our drug pipeline forward. Thank you, CD Biosynsis, for your amazing service!"

Dr. Clara Rodriguez, Chief Scientist, AstraZeneca Pharmaceuticals, Spain

   
   
   
           
   

FAQs about Yeast Genome Editing

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What is the typical timeline for a yeast gene knockout project?

A standard single gene knockout project typically takes about 4 to 6 weeks, which includes design, transformation, selection, and comprehensive verification of the final strain.

Can you edit non-conventional yeast species, like Pichia pastoris?

Yes. While S. cerevisiae is our primary host, we have established protocols for editing other industrial yeasts, including Pichia pastoris, Yarrowia lipolytica, and Hansenula polymorpha.

What kind of quality control is performed on the edited strains?

We perform rigorous QC, including locus-specific PCR to confirm integration size, Sanger sequencing of the edited region to verify base accuracy, and often whole-plasmid sequencing to confirm the vector integrity.

Is your CRISPR system marker-free?

We specialize in marker-free and scarless editing strategies using temporary selection cassettes or counter-selection systems, which is crucial for industrial applications.

How much does Metabolic Engineering services cost?

The cost of Metabolic Engineering services depends on the project scope, complexity of the target compound, the host organism chosen, and the required yield optimization. We provide customized quotes after a detailed discussion of your specific research objectives.

Do your engineered strains meet regulatory standards?

We adhere to high quality control standards in all strain construction and optimization processes. While we do not handle final regulatory approval, our detailed documentation and compliance with best laboratory practices ensure your engineered strains are prepared for necessary regulatory filings (e.g., GRAS, FDA).

What to look for when selecting the best gene editing service?

We provide various gene editing services such as CRISPR-sgRNA library generation, stable transformation cell line generation, gene knockout cell line generation, and gene point mutation cell line generation. Users are free to select the type of service that suits their research.

Does gene editing allow customisability?

Yes, we offer very customised gene editing solutions such as AAV vector capsid directed evolution, mRNA vector gene delivery, library creation, promoter evolution and screening, etc.

What is the process for keeping data private and confidential?

We adhere to the data privacy policy completely, and all customer data and experimental data are kept confidential.

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