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1,4-Butanediol (BDO) Metabolic Engineering Service

1,4-Butanediol (BDO) is a high-volume industrial chemical used as a bio-monomer for elastomers (e.g., polyurethanes) and engineering plastics (PBT). Industrial production via petrochemical routes faces environmental and cost pressures as chemical synthesis uses toxic/high-pressure reagents (e.g., maleic anhydride, butadiene), requiring severe operating conditions. Bio-based production is hampered by low flux from the central carbon metabolism (TCA cycle) to the BDO pathway intermediates (e.g., succinyl-CoA).

CD Biosynsis offers a complete metabolic pathway engineering solution to overcome these challenges. Our strategy includes: Pathway Design: Introduce a synthetic 4-Hydroxybutyryl-CoA (4-HB-CoA) pathway, requiring four heterologous enzymes, into E. coli . This bypasses TCA cycle bottlenecks by using Succinyl-CoA as an intermediate and directing flux to 4-HB (and then BDO). We further focus on Cofactor Balance: Optimize NADH/NADPH availability, which is critical for the final reduction steps . The final two BDO synthesis steps are reduction reactions highly dependent on NAD(P)H supply. Finally, we employ Enzyme Engineering: Directed evolution of the 4-HB-CoA reductase to improve efficiency and specificity . This key enzyme often has low activity or poor substrate specificity in heterologous hosts, limiting the overall flux to BDO.

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Pain Points Solutions Advantages Process FAQ

Pain Points

Industrial BDO production faces these key challenges in bio-routes:

  • Low Carbon Flux to Intermediate: The native TCA cycle is highly regulated, making it difficult to draw sufficient carbon flux to the initial BDO pathway intermediate, succinyl-CoA , limiting overall production.
  • Cofactor Imbalance for Reduction: The final steps of BDO synthesis involve two successive NADPH or NADH-dependent reduction reactions . A lack of sufficient cofactor supply or the wrong ratio causes a bottleneck.
  • Poor Enzyme Efficiency (4-HB-CoA reductase): The heterologous enzymes introduced into the host (specifically the 4-HB-CoA reductase and alcohol dehydrogenase) often have low specific activity or substrate promiscuity in the new cellular environment.
  • Competing Native Pathways: Native metabolic routes (e.g., succinate fermentation pathways or acetate production) divert carbon away from BDO precursors, decreasing the theoretical yield .

A successful bio-BDO solution requires optimizing flux towards succinyl-CoA and maximizing the efficiency of the synthetic pathway steps.

Solutions

CD Biosynsis utilizes advanced metabolic and enzyme engineering to optimize BDO production:

Synthetic 4-HB-CoA Pathway Design

           

We engineer a high-flux synthetic pathway (e.g., succinyl-CoA to succinate semialdehyde to 4-hydroxybutyrate to BDO) using up to four optimized heterologous genes .

Cofactor Engineering (NADH/\text{NADPH)

We employ cofactor-switching or overexpress transhydrogenase (e.g., PntAB) or NAD-dependent enzymes to ensure adequate supply of NAD(P)H for final BDO reduction.

Directed Evolution of Key Enzymes

We use directed evolution to improve the catalytic efficiency and specificity of bottleneck enzymes, such as 4-HB-CoA reductase (4HB CoA DH) , for the host (E. coli or yeast).

Block Competing Pathways

We delete genes (e.g., adhE, ackA) that divert carbon flux to by-products (e.g., ethanol, acetate, succinate), and we engineer the TCA cycle to feed succinyl-CoA. [Image of High Conversion Efficiency Icon]

This systematic optimization ensures high-titer, high-yield BDO production from renewable feedstocks.

Advantages

Our BDO engineering service is dedicated to pursuing the following production goals:

Sustainable and Bio-Based Production Icon

BDO is produced from renewable sugars, avoiding toxic petrochemical reagents and high pressure conditions.

Increased Carbon Flux to BDO Icon

Synthetic pathway design and TCA cycle tuning overcome the native metabolic bottleneck at succinyl-CoA.

Optimized Cofactor Regeneration Icon

Engineering the NADH/\text{NADPH pool removes reduction step bottlenecks and maintains a high reaction rate. [Image of Cost Reduction Icon]

Enhanced Enzyme Performance Icon

Directed evolution of key reductases (e.g., 4-HB-CoA reductase) improves activity and specificity in the host.

High Titer and Yield Icon

A systematic optimization of flux control and pathway steps results in a high carbon yield from glucose to BDO.

We provide a reliable and economically competitive biological alternative to petrochemical BDO production.

Process

Our 1,4$-Butanediol strain engineering service follows a rigorous, multi-stage research workflow:

  • Pathway Construction: Design and construct the synthetic 4-HB-CoA pathway in E. coli or yeast, introducing all four heterologous enzymes (e.g., Succinyl-CoA reductase, 4-HB-CoA reductase etc.) with optimized expression levels .
  • Native Pathway Optimization: Knockout competing pathways (e.g., acetate, ethanol formation genes) and reengineer TCA cycle flux to maximize Succinyl-CoA availability.
  • Cofactor Redox Tuning: Engineer the NADPH supply (e.g., via pentose phosphate pathway or transhydrogenase overexpression) to match the demand of the synthetic reductases.
  • Key Enzyme Evolution: Perform high-throughput screening and directed evolution (e.g., error-prone PCR) on the 4-HB-CoA reductase to enhance its activity and fidelity for BDO.
  • Fermentation Validation: Validate the engineered strain in fed-batch fermentation to measure the final BDO titer (g/L), yield, and productivity (g/L/h) .

Technical communication is maintained throughout the process, focusing on timely feedback regarding yield and product quality attributes.

Explore the potential for a high-titer, sustainable BDO supply. CD Biosynsis provides customized strain and process engineering solutions:

  • Detailed Enzyme Kinetics Report for the final optimized 4-HB-CoA reductase, demonstrating enhanced activity (kcat and Km) and specificity.
  • Consultation on fermentation protocols and cofactor supplementation strategies for commercial scale.
  • Experimental reports include complete raw data on final BDO titer, yield (g/g glucose), and by-product formation , crucial for economic viability.

FAQ (Frequently Asked Questions)

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Why is the 4-HB-CoA pathway used to make BDO in E. coli?

The 4-HB-CoA pathway is the most studied synthetic route. It starts from succinyl-CoA (an intermediate of the TCA cycle) and involves four enzymatic steps to reduce the carbon backbone to BDO. This pathway was the first to demonstrate industrial potential by achieving high titers in engineered hosts like E. coli.

What is the role of Cofactor Balance in BDO synthesis?

The synthesis of BDO from 4-HB requires multiple NAD(P)H-dependent reduction steps. Insufficient NAD(P)H supply or an unfavorable NADH/\text{NADPH ratio will cause intermediate accumulation (e.g., 4HB accumulation) and slow the overall BDO production rate. Cofactor engineering ensures the cellular redox state supports maximal reductase activity.

Why is directed evolution needed for reductases in this pathway?

The enzymes (reductases and dehydrogenases) used in the synthetic BDO pathway are often sourced from non-BDO producing organisms. When expressed in a new host (E. coli), they may have low activity, poor stability, or act on competing native substrates. Directed evolution is used to mutagenize and screen for variants with significantly enhanced catalytic efficiency and specificity for the BDO intermediates.

What are the major by-products to block in E. coli?

In E. coli, key competing pathways that must be blocked to maximize BDO yield include the production of acetate, ethanol, lactate, and succinate (especially under anaerobic conditions). This is achieved by deleting genes like adhE, ldhA, and ackA.

What is the estimated project timeline?

A comprehensive project involving synthetic pathway construction, cofactor engineering, and enzyme directed evolution typically requires 28-36 weeks for final strain delivery and high-titer validation.

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